Errors and Warnings in HaploGrep2

What triggers an Error and what is considered a Warning in HaploGrep2? Here’s a short overview of the events: Errors: The detected haplogroup quality is low. Sample is marked red. Quality <=80% The expected haplogroup¬†is not a super group of the detected haplogroup Common rCRS polymorphism not found!¬†The sample seems not properly aligned to rCRS. …