Score calculation in HaploGrep

In this blog post we show how Haplogrep’s default measure (so called Kulczynski measure) works on a concrete example. (Note: this blog post has been updated after receiving a correction from Chris Simpson, Thanks!) So let’s say this is your input sample in hsd format: test 16024-16569;1-576; ? 73G 263G 285T 315.1C 455.1T 523G 524T …