HaploGrep 2.0 – Beta

We are happy to announce HaploGrep 2.0 – Beta Version. We want YOU to give it a try, and help us to improve the software. We also want to say thanks to all the fruitful discussions, especially with our collaborators Antonio Salas and Hans Bandelt. All new features will be introduced one by one in … 

 

Importing VCF file to HaploGrep 2.0

With the establishment of NGS-Devices and the resulting data flood, new file formats such as FASTQ, SAM, BAM or VCF became de-facto standards in the bioinformatics data world. Especially the VCF-file containing the variants became of special interest in the user requests lately.¬†There are some python scripts available, that convert a VCF file to a … 

 

rCRS vs. RSRS vs. HG19 (Yoruba)

It’s not always straight forward when¬†working with the human mitochondrial DNA, even if it comes to the question: “what reference sequence do you use?” There should be just one reference and the questions therefore obsolete – what however is not the case. Since the first sequencing of the human mitochondrial genome by Anderson et al. …