Within the new HaploGrep 2.0 Beta version some new export formats are now supported. One of the most powerful is the export of a phylogenetic tree, representing the current profiles loaded into HaploGrep. This feature generates almost publication-ready  phylogenetic trees. We used them with almost no modification (some color-highlighting in Inkscape) – please see [1].

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• Upload the input file as usually, the haplogroup classification is now done automatically
• Click Save and select Phylogenetic Tree
• Next choose between 3 different graphic file formats to export:
  • SVG = vector graphic format – can be modified with tools such as Inkscape (free), CorelDraw, Adobe Indesign, Microsoft Visio.
  • PDF = portable document format for your PDF Reader
  • PNG = rendered graphic,  can be opened either with your browser or any graphic editing/previewing program which most operating systems include.
    In the beta phase this will be the only working option
• Choose from the options:
  • Include hotspots: should the hotspots defined in Phylotree also be represented in the export? Default: yes
  • Include AAC: should Amino Acid Changes (AAC) for unused mtSNPs be additionally annotated in the tree? Default: no
• Click Export
• Don’t hesitate to contact us if you encounter problems

[1] Summerer M, Horst J, Erhart G, Weißensteiner H, Schönherr S, et al. (2014) Large-scale mitochondrial DNA analysis in Southeast Asia reveals evolutionary effects of cultural isolation in the multi-ethnic population of Myanmar. BMC Evol Biol 14: 17. doi:10.1186/1471-2148-14-17. http://www.biomedcentral.com/1471-2148/14/17